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Publications - Publications Archive
Fecal microbial determinants of fecal and systemic estrogens and estrogen metabolites: a cross-sectional study, Journal of translational medicine. 2012-12-21
Twice-daily application of HIV microbicides alter the vaginal microbiota, mBio. 2012-12-18
Ischaemic stroke: the ocular motor system as a sensitive marker for motor and cognitive recovery, Journal of neurology, neurosurgery, and psychiatry. 2012-12-06
Integrated metagenomics/metaproteomics reveals human host-microbiota signatures of Crohn's disease, PloS one. 2012-11-28
Defining a healthy human gut microbiome: current concepts, future directions, and clinical applications, Cell host & microbe. 2012-11-19
Comparative Genomics and stx Phage Characterization of LEE-Negative Shiga Toxin-Producing Escherichia coli, Frontiers in cellular and infection microbiology. 2012-11-07
A closer look at visually guided saccades in autism and Asperger's disorder, Frontiers in integrative neuroscience. 2012-11-07
An integrated map of genetic variation from 1,092 human genomes, Nature. 2012-11-06
Transcriptional modulation of enterotoxigenic Escherichia coli virulence genes in response to epithelial cell interactions, Infection and immunity. 2012-10-31
Association between Trichomonas vaginalis and vaginal bacterial community composition among reproductive-age women, Sexually transmitted diseases. 2012-09-25
Genome sequence of Enterobacter radicincitans DSM16656(T), a plant growth-promoting endophyte, Journal of bacteriology. 2012-09-11
Genomic insights into the emerging human pathogen Mycobacterium massiliense, Journal of bacteriology. 2012-09-11
Cognition and eye movements: assessment of cerebral dysfunction, Journal of neuro-ophthalmology : the official journal of the North American Neuro-Ophthalmology Society. 2012-08-23
Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome, PloS one. 2012-08-15
The Human Microbiome Project: a community resource for the healthy human microbiome, PLoS biology. 2012-08-14
Natural transformation facilitates transfer of transposons, integrons and gene cassettes between bacterial species, PLoS pathogens. 2012-08-02
RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011, Standards in genomic sciences. 2012-07-28
Microbial transformation from normal oral microbiota to acute endodontic infections, BMC genomics. 2012-07-28
Surgical site infection prophylaxis strategies for cardiothoracic surgery: a decision-analytic model, Scandinavian journal of infectious diseases. 2012-07-25
The Metadata Coverage Index (MCI): A standardized metric for quantifying database metadata richness, Standards in genomic sciences. 2012-07-20
Hybrid error correction and de novo assembly of single-molecule sequencing reads, Nature biotechnology. 2012-07-01
Vaginal microbiome: rethinking health and disease, Annual review of microbiology. 2012-06-28
Association of fecal microbial diversity and taxonomy with selected enzymatic functions, PloS one. 2012-06-28
Automated hierarchical classification of protein domain subfamilies based on functionally-divergent residue signatures, BMC bioinformatics. 2012-06-22
Kinetic and phylogenetic analysis of plant polyamine uptake transporters, Planta. 2012-06-19
Genomic diversity of 2010 Haitian cholera outbreak strains, Proceedings of the National Academy of Sciences of the United States of America. 2012-06-18
A framework for human microbiome research, Nature. 2012-06-13
Structure, function and diversity of the healthy human microbiome, Nature. 2012-06-13
Metabolic reconstruction for metagenomic data and its application to the human microbiome, PLoS computational biology. 2012-06-13
Complex carbohydrate utilization by the healthy human microbiome, PloS one. 2012-06-13
Comparison of storage conditions for human vaginal microbiome studies, PloS one. 2012-05-24
Shigella flexneri effectors OspE1 and OspE2 mediate induced adherence to the colonic epithelium following bile salts exposure, Molecular microbiology. 2012-05-23
Comparative genomics of vancomycin-resistant Staphylococcus aureus strains and their positions within the clade most commonly associated with Methicillin-resistant S. aureus hospital-acquired infection in the United States, mBio. 2012-05-22
Exploring a road map to counter misconceptions about the cervicovaginal microbiome and disease, Reproductive sciences (Thousand Oaks, Calif.). 2012-05-21
Genome sequence of Klebsiella oxytoca 11492-1, a nosocomial isolate possessing a FOX-5 AmpC β-lactamase, Journal of bacteriology. 2012-05-14
Draft genome sequences of the diarrheagenic Escherichia coli collection, Journal of bacteriology. 2012-05-14
LPS remodeling is an evolved survival strategy for bacteria, Proceedings of the National Academy of Sciences of the United States of America. 2012-05-14
Efficient subtraction of insect rRNA prior to transcriptome analysis of Wolbachia-Drosophila lateral gene transfer, BMC research notes. 2012-05-14
Phylomark, a tool to identify conserved phylogenetic markers from whole-genome alignments, Applied and environmental microbiology. 2012-05-11
Report of the 13(th) Genomic Standards Consortium Meeting, Shenzhen, China, March 4-7, 2012, Standards in genomic sciences. 2012-05-04
Temporal dynamics of the human vaginal microbiota, Science translational medicine. 2012-05-03
Whole-genome sequences of Bacillus subtilis and close relatives, Journal of bacteriology. 2012-04-11
CRISPR/cas loci of type II Propionibacterium acnes confer immunity against acquisition of mobile elements present in type I P. acnes, PloS one. 2012-03-30
Novel plasmids and resistance phenotypes in Yersinia pestis: unique plasmid inventory of strain Java 9 mediates high levels of arsenic resistance, PloS one. 2012-03-30
Evaluation of methods for the extraction and purification of DNA from the human microbiome, PloS one. 2012-03-23
Proof of concept of microbiome-metabolome analysis and delayed gluten exposure on celiac disease autoimmunity in genetically at-risk infants, PloS one. 2012-03-14
Genome stability of Lyme disease spirochetes: comparative genomics of Borrelia burgdorferi plasmids, PloS one. 2012-03-14
Molecular epidemiology of Neisseria meningitidis serogroup B in Brazil, PloS one. 2012-03-14
Assessment of the human faecal microbiota: I. Measurement and reproducibility of selected enzymatic activities, European journal of clinical investigation. 2012-03-13
Understanding vaginal microbiome complexity from an ecological perspective, Translational research : the journal of laboratory and clinical medicine. 2012-03-06
Conceptualizing a Genomics Software Institute (GSI), Standards in genomic sciences. 2012-03-05
Assessment of the human faecal microbiota: II. Reproducibility and associations of 16S rRNA pyrosequences, European journal of clinical investigation. 2012-03-03
Draft genome sequence of Vibrio fischeri SR5, a strain isolated from the light organ of the Mediterranean squid Sepiola robusta, Journal of bacteriology. 2012-02-29
Genome sequences of four divergent multidrug-resistant Acinetobacter baumannii strains isolated from patients with sepsis or osteomyelitis, Journal of bacteriology. 2012-02-29
Backpacks and school children's obesity: challenges for public health and ergonomics, Work (Reading, Mass.). 2012-02-09
Longitudinal assessment of antisaccades in patients with multiple sclerosis, PloS one. 2012-02-02
Policy: Adaptations of avian flu virus are a cause for concern, Nature. 2012-01-31
Adaptations of Avian Flu Virus Are a Cause for Concern, Science (New York, N.Y.). 2012-01-31
Bilateral dysgerminoma in a patient with a previous diagnosis of Swyer syndrome, The journal of obstetrics and gynaecology research. 2012-01-25
Using Sybil for interactive comparative genomics of microbes on the web, Bioinformatics (Oxford, England). 2012-01-18
Genomic Characterization of Enteroaggregative Escherichia coli From Children in Mali, The Journal of infectious diseases. 2012-01-13
Origin and Variation of Tunicate Secondary Metabolites, Journal of natural products. 2012-01-10
The phylogeographic footprint of colonial history in the global dispersal of HIV-2 group A, The Journal of general virology. 2012-01-04
Analysis of the global transcriptional profiles of enterotoxigenic Escherichia coli (ETEC) isolate E24377A, Infection and immunity. 2012-01-03