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Publications - Publications 2023
Analyzing risk factors for post-acute recovery in older adults with Alzheimer's disease and related dementia: A new semi-parametric model for large-scale medicare claims, Statistics in medicine. 2023 Dec 27
Divergent LpxO enzymes perform site-specific lipid A 2-hydroxylation, mBio. 2023 Dec 22
Differential Gene Expression in Pain-Related Genes are not Affected by the Presence of Dementia, Pain management nursing : official journal of the American Society of Pain Management Nurses. 2023 Dec 21
Correction: Association between low-sodium salt intervention and long-term blood pressure changes is modified by ENaC genetic variation: a gene-diet interaction analysis in a randomized controlled trial, Food & function. 2023 Dec 21
Detecting residual chronic Salmonella Typhi carriers on the road to typhoid elimination in Santiago, Chile, 2017-2019, The Journal of infectious diseases. 2023 Dec 20
Factors Associated With Extraintestinal Manifestations of Inflammatory Bowel Disease in SPARC-IBD, Inflammatory bowel diseases. 2023 Dec 15
fungi suppress nitric oxide production by macrophages, mBio. 2023 Dec 14
Tension Parameters of Junctional Tethers in Proximal Junction Kyphosis: A Cadaveric Biomechanical Study, World neurosurgery. 2023 Dec 12
Rapid intestinal and systemic metabolic reprogramming in an immunosuppressed environment, BMC microbiology. 2023 Dec 09
Identification of CT-based non-invasive radiomic biomarkers for overall survival prediction in oral cavity squamous cell carcinoma, Scientific reports. 2023 Dec 08
Duloxetine plus exercise for knee osteoarthritis and depression: A feasibility study, Osteoarthritis and cartilage open. 2023 Dec 08
PRELIMINARY EVALUATION OF NOVEL BODILY ATTENTION TASK TO ASSESS THE ROLE OF THE BRAIN IN CHEMOTHERAPY-INDUCED PERIPHERAL NEUROTOXICITY (CIPN), Behavioural brain research. 2023 Dec 07
Safety and tolerability of topiramate and N-acetyl cysteine combination in individuals with alcohol use disorder: a 12 week, randomized, double-blind, pilot study, Alcohol and alcoholism (Oxford, Oxfordshire). 2023 Dec 07
Defective kernel 58 encodes an Rrp15p domain-containing protein essential to ribosome biogenesis and seed development in maize, The New phytologist. 2023 Dec 07
mechanisms of immune modulation and tolerance, Gut microbes. 2023 Dec 06
pH-responsive nanogels with enhanced antioxidant and antitumor activities on drug delivery and smart drug release, International journal of biological macromolecules. 2023 Dec 04
A Practical Guide to Evaluating and Using Big Data in Digestive Disease Research, Gastroenterology. 2023 Dec 03
Integrating compositional and functional content to describe vaginal microbiomes in health and disease, Microbiome. 2023 Nov 30
Examining the mediating effects of motivation between job insecurity and innovative behavior using a variable-centered and a person-centered approach, Frontiers in psychology. 2023 Nov 30
Common analysis of direct RNA sequencinG CUrrently leads to misidentification of mC at GCU motifs, Life science alliance. 2023 Nov 29
Sub-communities of the vaginal microbiota in pregnant and non-pregnant women, Proceedings. Biological sciences. 2023 Nov 29
A Narrative Review on Spontaneous Clearance of Urogenital Chlamydia trachomatis: Host, Microbiome, and Pathogen-Related Factors, Sexually transmitted diseases. 2023 Nov 25
Sex differences in the serum proteomic profile during acute low back pain - A preliminary study of the relationship to future low back pain, The journal of pain. 2023 Nov 19
Vaginal microbes alter epithelial transcriptomic and epigenomic modifications providing insight into the molecular mechanisms for susceptibility to adverse reproductive outcomes, Research square. 2023 Nov 16
The DO-KB Knowledgebase: a 20-year journey developing the disease open science ecosystem, Nucleic acids research. 2023 Nov 11
Cochlear organoids reveal transcriptional programs of postnatal hair cell differentiation from supporting cells, Cell reports. 2023 Nov 10
Tick extracellular vesicles impair epidermal homeostasis through immune-epithelial networks during hematophagy, bioRxiv : the preprint server for biology. 2023 Nov 10
Single-cell genomics reveals region-specific developmental trajectories underlying neuronal diversity in the human hypothalamus, Science advances. 2023 Nov 08
Gastroenterology Fellowship and Postdoctoral Training in Omics and Statistics-Part II: How Can It Be Achieved?, Digestive diseases and sciences. 2023 Nov 02
Gastroenterology Fellowship and Postdoctoral Training in Omics and Statistics-Part I: Why Is It Needed?, Digestive diseases and sciences. 2023 Nov 02
Time-varying treatment effect modification of oral analgesic effectiveness by depressive symptoms in knee osteoarthritis: an application of structural nested mean models in a prospective cohort, International journal of epidemiology. 2023 Nov 02
Nociceptive and Transcriptomic Responses in a Swine Diabetic Wound Model Treated With a Topical AT1R Antagonist, Nursing research. 2023 Nov 01
Gene expression analyses reveal differences in children's response to malaria according to their age, Research square. 2023 Oct 27
Reviving Zn Dendrites to Electroactive Zn by Mesoporous MXene with Active Edge Sites, Journal of the American Chemical Society. 2023 Oct 27
Gene expression analyses reveal differences in children's response to malaria according to their age, bioRxiv : the preprint server for biology. 2023 Oct 26
Correction: Hemozoin produced by mammals confers heme tolerance, eLife. 2023 Oct 20
Adsorption of As(III) by microplastics coexisting with antibiotics, The Science of the total environment. 2023 Oct 20
Genome wide association joint analysis reveals 99 risk loci for pain susceptibility and pleiotropic relationships with psychiatric, metabolic, and immunological traits, PLoS genetics. 2023 Oct 16
Association between low-sodium salt intervention and long-term blood pressure changes is modified by ENaC genetic variation: a gene-diet interaction analysis in a randomized controlled trial, Food & function. 2023 Oct 16
Spatiotemporal heterogeneity of inundation pattern of floodplain lake wetlands and impact on wetland vegetation, The Science of the total environment. 2023 Oct 13
Genomic, transcriptomic, and phenotypic differences among archetype strains of serotypes 2a, 3a, and 6, mSphere. 2023 Oct 13
Proteomic Analysis to Identify Prospective Biomarkers of Treatment Outcome After Microvascular Decompression for Trigeminal Neuralgia: A Preliminary Study, The journal of pain. 2023 Oct 12
A Multifunctional Hydrogel for Simultaneous Visible H O Monitoring And Accelerating Diabetic Wound Healing, Advanced healthcare materials. 2023 Oct 12
A single-cell genomic atlas for maturation of the human cerebellum during early childhood, Science translational medicine. 2023 Oct 12
Software-based interventions for low back pain management: A systematic review and meta-analysis, Journal of nursing scholarship : an official publication of Sigma Theta Tau International Honor Society of Nursing. 2023 Oct 10
Emerging Opportunities to Study Mobile Element Insertions and Their Source Elements in an Expanding Universe of Sequenced Human Genomes, Genes. 2023 Oct 10
Understanding the pathophysiology of idiopathic intracranial hypertension (IIH): a review of recent developments, Journal of neurology, neurosurgery, and psychiatry. 2023 Oct 05
Relationships between the vaginal microbiota and genitourinary syndrome of menopause symptoms in postmenopausal women: the Study of Women's Health Across the Nation, Menopause (New York, N.Y.). 2023 Oct 03
The role of the minor colonization factor CS14 in adherence to intestinal cell models by geographically diverse ETEC isolates, mSphere. 2023 Oct 03
Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability, Biodiversity data journal. 2023 Oct 03
Rapid intestinal and systemic metabolic reprogramming in an immunosuppressed environment, Research square. 2023 Sep 22
Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Typhi genomes, eLife. 2023 Sep 12
Diabetes burden, trends, and inequalities in western pacific region, 1990-2019: A population-based study, Diabetes & metabolic syndrome. 2023 Sep 11
Gynecological concerns and vaginal practices and exposures among transfeminine individuals who have undergone vaginoplasty, The journal of sexual medicine. 2023 Sep 11
Comparing Apples to Apples: Exploring public reporting of congenital cardiac surgery outcomes based on common congenital heart operations, The Journal of thoracic and cardiovascular surgery. 2023 Sep 07
Tick hemocytes have pleiotropic roles in microbial infection and arthropod fitness, bioRxiv : the preprint server for biology. 2023 Sep 03
Metformin Protects Against Noise-Induced Hearing Loss in Male Mice, Otology & neurotology : official publication of the American Otological Society, American Neurotology Society [and] European Academy of Otology and Neurotology. 2023 Aug 31
Spatially distinct otic mesenchyme cells show molecular and functional heterogeneity patterns before hearing onset, iScience. 2023 Aug 29
Nitric Oxide: Physiological Functions, Delivery, and Biomedical Applications, Advanced science (Weinheim, Baden-Wurttemberg, Germany). 2023 Aug 26
Identification of CT-based non-invasive Radiographic Biomarkers for Overall Survival Stratification in Oral Cavity Squamous Cell Carcinoma, Research square. 2023 Aug 23
Insights into the Mechanisms and Structure of Breakage-Fusion-Bridge Cycles in Cervical Cancer using Long-Read Sequencing, medRxiv : the preprint server for health sciences. 2023 Aug 22
High-fat diet impact on intestinal cholesterol conversion by the microbiota and serum cholesterol levels, iScience. 2023 Aug 21
Adult Kawasaki disease: a rare and challenging diagnosis-a case report, European heart journal. Case reports. 2023 Aug 18
Genome-wide association studies and fine-mapping identify genomic loci for n-3 and n-6 polyunsaturated fatty acids in Hispanic American and African American cohorts, Communications biology. 2023 Aug 16
Efficacy and Safety Evaluation of Scleral Cross-Linking Using Genipin in the Treatment of Juvenile Guinea Pigs with High Myopia, Journal of ocular pharmacology and therapeutics : the official journal of the Association for Ocular Pharmacology and Therapeutics. 2023 Aug 15
Evaluation of vaginal microbiome equilibrium states identifies microbial parameters linked to resilience after menses and antibiotic therapy, PLoS computational biology. 2023 Aug 11
Bacterial amylases enable glycogen degradation by the vaginal microbiome, Nature microbiology. 2023 Aug 10
Vaginal microbiome, antiretroviral concentrations, and HIV genital shedding in the setting of hormonal contraception initiation in Malawi, AIDS (London, England). 2023 Aug 09
Cervicovaginal Microbial-Immune State and Group B Streptococcus Colonization in Pregnancy, American journal of perinatology. 2023 Aug 09
Letter to the Editor on "A randomized trial on the effectiveness and safety of 5 water-based personal lubricants", The journal of sexual medicine. 2023 Aug 08
Survival benefit of perioperative locoregional adjuvant treatment for hepatocellular carcinoma with portal vein tumor thrombosis: A systematic review and Bayesian network meta-analysis, Critical reviews in oncology/hematology. 2023 Aug 01
Broadly neutralizing antibodies consistently trap HIV-1 in fresh cervicovaginal mucus from select individuals, Acta biomaterialia. 2023 Jul 25
The Vaginal Microbiota of Pregnant Women Varies with Gestational Age, Maternal Age, and Parity, Microbiology spectrum. 2023 Jul 24
Developing a Quality Assurance Framework for Neuro-Ophthalmology Using a Multisite Data Registry, Journal of neuro-ophthalmology : the official journal of the North American Neuro-Ophthalmology Society. 2023 Jul 20
Predicting Heterogeneity in Patient Response to Morphine Treatment for Neonatal Opioid Withdrawal Syndrome, Clinical pharmacology and therapeutics. 2023 Jul 20
X-Chromosome Association Study in Latin American Cohorts Identifies New Loci in Parkinson's Disease, Movement disorders : official journal of the Movement Disorder Society. 2023 Jul 20
Notes from the Underground: Heme Homeostasis in , Biomolecules. 2023 Jul 19
Strong Positive Selection Biases Identity-By-Descent-Based Inferences of Recent Demography and Population Structure in , bioRxiv : the preprint server for biology. 2023 Jul 15
Evaluation of the Recommended 30 cc/kg Fluid Dose for Patients With Septic Shock and Hypoperfusion With Lactate Greater Than 4 mmol/L, Critical care explorations. 2023 Jul 13
A Review of Finite Element Modeling for Anterior Cervical Discectomy and Fusion, Asian spine journal. 2023 Jul 06
Associations of Days Spent at Home Before Hip Fracture With Post-Fracture Days at Home and 1-Year Mortality Among Medicare Beneficiaries Living with Alzheimer's Disease or Related Dementias, The journals of gerontology. Series A, Biological sciences and medical sciences. 2023 Jul 04
Transcriptomic profiling of reward and sensory brain areas in perinatal fentanyl exposed juvenile mice, Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 2023 Jul 03
A guide to the BRAIN Initiative Cell Census Network data ecosystem, PLoS biology. 2023 Jun 30
An open dataset for intelligent recognition and classification of abnormal condition in longwall mining, Scientific data. 2023 Jun 27
Genomic and Functional Characterization of Longitudinal Pseudomonas aeruginosa Isolates from Young Patients with Cystic Fibrosis, Microbiology spectrum. 2023 Jun 26
Pain self-management plus activity tracking and nurse-led support in adults with chronic low back pain: feasibility and acceptability of the problem-solving pain to enhance living well (PROPEL) intervention, BMC nursing. 2023 Jun 25
Impact of exposure to air pollution on cervicovaginal microbial communities, Environmental research. 2023 Jun 22
Multicenter analysis of immunosuppressive medications on the risk of malignancy following adult solid organ transplantation, Frontiers in oncology. 2023 Jun 16
Evolution of chemosensory and detoxification gene families across herbivorous Drosophilidae, G3 (Bethesda, Md.). 2023 Jun 15
Clinical and Bacterial Characteristics Associated with Glove and Gown Contamination by Carbapenem-Resistant Klebsiella pneumoniae in the Health Care Setting, Microbiology spectrum. 2023 Jun 08
COVID-19 severity and cardiovascular outcomes in SARS-CoV-2-infected patients with cancer and cardiovascular disease, Translational oncology. 2023 Jun 02
Investigating the impact of condomless vaginal intercourse and lubricant use on the vaginal metabolome: a pre-post observational study, Sexually transmitted infections. 2023 May 31
Novel Host Pathways Govern Epithelial Cell Invasion of Aspergillus fumigatus, Microbiology spectrum. 2023 May 31
Tumor microenvironment-responsive spherical nucleic acid nanoparticles for enhanced chemo-immunotherapy, Journal of nanobiotechnology. 2023 May 26
The brain's dark transcriptome: Sequencing RNA in distal compartments of neurons and glia, Current opinion in neurobiology. 2023 May 15
Clinical considerations at the intersection of hematopoietic cell transplantation and hereditary hematopoietic malignancy, Frontiers in oncology. 2023 May 12
Proof of Concept: detection of cell free RNA from EDTA plasma in patients with lung cancer and non-cancer patients, Clinical biochemistry. 2023 May 12
Association of Pregnancy and HIV Status with Molecular-Bacterial Vaginosis in Indian Women, Journal of acquired immune deficiency syndromes (1999). 2023 May 08
Preparation of imidazole acids grafted chitosan with enhanced antioxidant, antibacterial and antitumor activities, Carbohydrate polymers. 2023 May 05
Common Analysis of Direct RNA SequencinG CUrrently Leads to Misidentification of 5-Methylcytosine Modifications at GCU Motifs, bioRxiv : the preprint server for biology. 2023 May 03
Rapid effects of valproic acid on the fetal brain transcriptome: Implications for brain development and autism, bioRxiv : the preprint server for biology. 2023 May 02
Tryptophan challenge in individuals with schizophrenia and healthy controls: acute effects on circulating kynurenine and kynurenic acid, cognition and cerebral blood flow, Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology. 2023 Apr 28
Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report, Astrobiology. 2023 Apr 26
Author Correction: Strain-specific alterations in gut microbiome and host immune responses elicited by tolerogenic Bifidobacterium pseudolongum, Scientific reports. 2023 Apr 24
FRC transplantation restores lymph node conduit defects in laminin α4-deficient mice, JCI insight. 2023 Apr 24
Depletion of Extracellular Chemokines by Aspergillus Melanin, mBio. 2023 Apr 17
Plasma metabolomic signatures of dual decline in memory and gait in older adults, GeroScience. 2023 Apr 13
Adult expression of Semaphorins and Plexins is essential for motor neuron survival, Scientific reports. 2023 Apr 11
Correction: Chitinase 1 regulates pulmonary fibrosis by modulating TGF-β/SMAD7 pathway via TGFBRAP1 and FOXO3, Life science alliance. 2023 Apr 10
A peptidoglycan recognition protein regulates the immune response of Rhynchophorus ferrugineus Olivier (Coleoptera: Dryophthoridae) during exposure to pathogenic Gram-positive bacteria and fungi, Developmental and comparative immunology. 2023 Apr 03
Factors Associated With Survival Disparities Between Non-Hispanic Black and White Patients With Uterine Cancer, JAMA network open. 2023 Apr 03
Impaired Reorganization of Centrosome Structure Underlies Human Infantile Dilated Cardiomyopathy, Circulation. 2023 Mar 27
Effects of spinal deformities on lung development in children: a review, Journal of orthopaedic surgery and research. 2023 Mar 27
Peripheral blood transcriptomic profiling indicates molecular mechanisms commonly regulated by binge-drinking and placebo-effects, medRxiv : the preprint server for health sciences. 2023 Mar 24
High-resolution functional description of vaginal microbiomes in health and disease, bioRxiv : the preprint server for biology. 2023 Mar 24
Evolution of chemosensory and detoxification gene families across herbivorous Drosophilidae, bioRxiv : the preprint server for biology. 2023 Mar 16
Differential Gene Expression Among Patients With Heart Failure Experiencing Pain, Nursing research. 2023 Mar 15
Influences of biochar with selenite on bacterial community in soil and Cd in peanut, Ecotoxicology and environmental safety. 2023 Mar 14
Potential application of novel cadmium-tolerant bacteria in bioremediation of Cd-contaminated soil, Ecotoxicology and environmental safety. 2023 Mar 14
Genomic diversity of non-diarrheagenic fecal Escherichia coli from children in sub-Saharan Africa and south Asia and their relatedness to diarrheagenic E. coli, Nature communications. 2023 Mar 14
Predictors of mobility status one year post hip fracture among community-dwelling older adults prior to fracture: A prospective cohort study, Journal of the American Geriatrics Society. 2023 Mar 14
and genital health: molecular clues to an enigmatic vaginal species, Current infectious disease reports. 2023 Mar 07
Genome-wide significant risk loci for mood disorders in the Old Order Amish founder population, Molecular psychiatry. 2023 Mar 07
Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data, bioRxiv : the preprint server for biology. 2023 Mar 07
Characteristics of humoral and cellular responses to coronavirus disease 2019 (COVID-19) inactivated vaccine in central China: A prospective, multicenter, longitudinal study, Frontiers in immunology. 2023 Mar 03
NLRC5 affects diet-induced adiposity in female mice and co-regulates peroxisome proliferator-activated receptor PPARγ target genes, iScience. 2023 Mar 02
Using source-associated mobile genetic elements to identify zoonotic extraintestinal infections, One health (Amsterdam, Netherlands). 2023 Feb 28
Evaluation of Commercial Products for Colistin and Polymyxin B Susceptibility Testing for -Positive and Negative and in China, Infection and drug resistance. 2023 Feb 27
Modeling the enigma of complex disease etiology, Journal of translational medicine. 2023 Feb 25
Genome-Wide Association Studies and fine-mapping of genomic loci for n-3 and n-6 Polyunsaturated Fatty Acids in Hispanic American and African American Cohorts, Research square. 2023 Feb 24
Age-dependent changes in the prognostic advantage of papillary thyroid cancer in women: A SEER-based study, Clinical endocrinology. 2023 Feb 18
Evaluating depressive symptoms, BDNF Val66Met, and APOE-ε4 as moderators of response to computerized cognitive training in heart failure, Heart & lung : the journal of critical care. 2023 Feb 17
Myxoid perineurioma: an entity with many mimics, Dermatology online journal. 2023 Feb 15
Breakthrough SARS-CoV-2 infections among patients with cancer following two and three doses of COVID-19 mRNA vaccines: a retrospective observational study from the COVID-19 and Cancer Consortium, Lancet regional health. Americas. 2023 Feb 13
Comparison of computer-assisted self-interview (CASI) versus clinician-interview (CI) for self-reported vulvovaginal symptoms, Sexually transmitted diseases. 2023 Feb 08
Discovery of the gut microbial enzyme responsible for bilirubin reduction to urobilinogen, bioRxiv : the preprint server for biology. 2023 Feb 08
Global, regional, and national burdens of blindness and vision loss in children and adolescents from 1990 to 2019: A trend analysis, Ophthalmology. 2023 Feb 07
X-Chromosome Association Study in Latin American Cohorts Identifies New Loci in Parkinson Disease, medRxiv : the preprint server for health sciences. 2023 Feb 02
James Sharpe's Contributions to Neurology and Neuro-ophthalmology: A Posthumous Tribute 10 Years On, The Canadian journal of neurological sciences. Le journal canadien des sciences neurologiques. 2023 Jan 30
Embryotoxicity and Teratogenicity of Steroidal Saponin Isolated from , Toxics. 2023 Jan 30
Factors influencing cage subsidence in anterior cervical corpectomy and discectomy: a systematic review, European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society. 2023 Jan 28
Big Data in Gastroenterology Research, International journal of molecular sciences. 2023 Jan 27
Short-term feeding of defatted bovine colostrum mitigates inflammation in the gut via changes in metabolites and microbiota in a chicken animal model, Animal microbiome. 2023 Jan 26
Malian children infected with Plasmodium ovale and Plasmodium falciparum display very similar gene expression profiles, PLoS neglected tropical diseases. 2023 Jan 25
Eye movement characteristics are not significantly influenced by psychiatric comorbidities in people with visual snow syndrome, Brain research. 2023 Jan 25
A prognostic model for predicting the duration of 20,049 sickness absence spells due to shoulder lesions in a population-based cohort in Sweden, PloS one. 2023 Jan 20
Strain-specific alterations in gut microbiome and host immune responses elicited by tolerogenic Bifidobacterium pseudolongum, Scientific reports. 2023 Jan 19
Association of subjective and objective measures of sleep with gut microbiota composition and diversity in older men: The Osteoporotic Fractures in Men (MrOS) study, The journals of gerontology. Series A, Biological sciences and medical sciences. 2023 Jan 19
Inhibition of Ribosome Assembly and Ribosome Translation Has Distinctly Different Effects on Abundance and Paralogue Composition of Ribosomal Protein mRNAs in Saccharomyces cerevisiae, mSystems. 2023 Jan 18
Stagnation in quality of next-generation sequencing assays for the diagnosis of hereditary hematopoietic malignancies, Journal of genetic counseling. 2023 Jan 15
Influence of Hormonal Contraceptive Use and HIV on Cervicovaginal Cytokines and Microbiota in Malawi, mSphere. 2023 Jan 09
Treatment Success Following Standard Antibiotic Treatment for Bacterial Vaginosis Is Not Associated With Pretreatment Genital Immune or Microbial Parameters, Open forum infectious diseases. 2023 Jan 07
Depression, stress, and regional cerebral blood flow, Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism. 2023 Jan 06