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Building a knowledge base on genetic variation and cancer risk through field synopses, Journal of the National Cancer Institute. 2008-12-30

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Comparative genomics of mutualistic viruses of Glyptapanteles parasitic wasps, Genome biology. 2008-12-30

Vinagre F, Santos A, Santos M, Prata A, Oliveira A, Silva JC

[Salivary gland scintigraphy in the evaluation of patients with sicca complaints], Acta reumatológica portuguesa. 2008-12-24

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Characterization of the complete zwittermicin A biosynthesis gene cluster from Bacillus cereus, Applied and environmental microbiology. 2008-12-19

Tettelin H, Riley D, Cattuto C, Medini D

Comparative genomics: the bacterial pan-genome, Current opinion in microbiology. 2008-12-16

Valdés J, Pedroso I, Quatrini R, Dodson RJ, Tettelin H, Blake R, Eisen JA, Holmes DS

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications, BMC genomics. 2008-12-11

Yu W, Wulf A, Liu T, Khoury MJ, Gwinn M

Gene Prospector: an evidence gateway for evaluating potential susceptibility genes and interacting risk factors for human diseases, BMC bioinformatics. 2008-12-08

Egan A, Mahurkar A, Crabtree J, Badger JH, Carlton JM, Silva JC

IDEA: Interactive Display for Evolutionary Analyses, BMC bioinformatics. 2008-12-08

Guo X, Silva JC

Properties of non-coding DNA and identification of putative cis-regulatory elements in Theileria parva, BMC genomics. 2008-12-03

Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley RE, Sogin ML, Jones WJ, Roe BA, Affourtit JP, Egholm M, Henrissat B, Heath AC, Knight R, Gordon JI

A core gut microbiome in obese and lean twins, Nature. 2008-11-30

Coyne RS, Thiagarajan M, Jones KM, Wortman JR, Tallon LJ, Haas BJ, Cassidy-Hanley DM, Wiley EA, Smith JJ, Collins K, Lee SR, Couvillion MT, Liu Y, Garg J, Pearlman RE, Hamilton EP, Orias E, Eisen JA, Methé BA

Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure, BMC genomics. 2008-11-26

Fielding J, Kilpatrick T, Millist L, White O

Multiple sclerosis: Cognition and saccadic eye movements, Journal of the neurological sciences. 2008-11-01

Vale AM, Fujiwara RT, da Silva Neto AF, Miret JA, Alvarez DC, da Silva JC, Campos-Neto A, Reed S, Mayrink W, Nascimento E

Identification of highly specific and cross-reactive antigens of Leishmania species by antibodies from Leishmania (Leishmania) chagasi naturally infected dogs, Zoonoses and public health. 2008-11-01

de Sousa SM, Rosselli LK, Kiyota E, da Silva JC, Souza GH, Peroni LA, Stach-Machado DR, Eberlin MN, Souza AP, Koch KE, Arruda P, Torriani IL, Yunes JA

Structural and kinetic characterization of a maize aldose reductase, Plant physiology and biochemistry : PPB / Société française de physiologie végétale. 2008-10-30

Fricke WF, Kusian B, Bowien B

The genome organization of Ralstonia eutropha strain H16 and related species of the Burkholderiaceae, Journal of molecular microbiology and biotechnology. 2008-10-29

Bordenstein SR, Paraskevopoulos C, Dunning Hotopp JC, Sapountzis P, Lo N, Bandi C, Tettelin H, Werren JH, Bourtzis K

Parasitism and mutualism in Wolbachia: what the phylogenomic trees can and cannot say, Molecular biology and evolution. 2008-10-28

Ravel J, Jiang L, Stanley ST, Wilson MR, Decker RS, Read TD, Worsham P, Keim PS, Salzberg SL, Fraser-Liggett CM, Rasko DA

The complete genome sequence of Bacillus anthracis Ames "Ancestor", Journal of bacteriology. 2008-10-24

Silva JC, Almeida JP, Serra S, Faquini I, Quinino S, Magalhães FN, Azevedo-Filho H

Aplasia cutis congenita of the scalp, Arquivos de neuro-psiquiatria. 2008-10-24

Emami K, Topakas E, Nagy T, Henshaw J, Jackson KA, Nelson KE, Mongodin EF, Murray JW, Lewis RJ, Gilbert HJ

Regulation of the xylan-degrading apparatus of Cellvibrio japonicus by a novel two-component system, The Journal of biological chemistry. 2008-10-15

Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, Feldblyum TV, Fernandez-Becerra C, Gilson PR, Gueye AH, Guo X, Kang'a S, Kooij TW, Korsinczky M, Meyer EV, Nene V, Paulsen I, White O, Ralph SA, Ren Q, Sargeant TJ, Salzberg SL, Stoeckert CJ, Sullivan SA, Yamamoto MM, Hoffman SL, Wortman JR, Gardner MJ, Galinski MR, Barnwell JW, Fraser-Liggett CM

Comparative genomics of the neglected human malaria parasite Plasmodium vivax, Nature. 2008-10-09

Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics, Nucleic acids research. 2008-10-05

Bennett EA, Keller H, Mills RE, Schmidt S, Moran JV, Weichenrieder O, Devine SE

Active Alu retrotransposons in the human genome, Genome research. 2008-10-03

Silva JC, Faquini IV, Kitamura MA, Azevedo-Filho HR

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Lozupone CA, Hamady M, Cantarel BL, Coutinho PM, Henrissat B, Gordon JI, Knight R

The convergence of carbohydrate active gene repertoires in human gut microbes, Proceedings of the National Academy of Sciences of the United States of America. 2008-09-19

Leitão JM, Gonçalves H, Mendonça C, da Silva JC

Multiway chemometric decomposition of EEM of fluorescence of CdTe quantum dots obtained as function of pH, Analytica chimica acta. 2008-09-16

Vazquez-Juarez RC, Kuriakose JA, Rasko DA, Ritchie JM, Kendall MM, Slater TM, Sinha M, Luxon BA, Popov VL, Waldor MK, Sperandio V, Torres AG

CadA negatively regulates Escherichia coli O157:H7 adherence and intestinal colonization, Infection and immunity. 2008-09-15

Bressan GC, Silva JC, Borges JC, Dos Passos DO, Ramos CH, Torriani IL, Kobarg J

Human regulatory protein Ki-1/57 has characteristics of an intrinsically unstructured protein, Journal of proteome research. 2008-09-13

van de Werken HJ, Verhaart MR, VanFossen AL, Willquist K, Lewis DL, Nichols JD, Goorissen HP, Mongodin EF, Nelson KE, van Niel EW, Stams AJ, Ward DE, de Vos WM, van der Oost J, Kelly RM, Kengen SW

Hydrogenomics of the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus, Applied and environmental microbiology. 2008-09-05

Howe D, Costanzo M, Fey P, Gojobori T, Hannick L, Hide W, Hill DP, Kania R, Schaeffer M, St Pierre S, Twigger S, White O, Rhee SY

Big data: The future of biocuration, Nature. 2008-09-04

Lupatini JO, da Silva JC, Pomatti DM, Bettinelli LA

[Metabolic syndrome and life style], Revista gaúcha de enfermagem / EENFUFRGS. 2008-09-04

Gurvich CT, Fitzgerald PB, Georgiou-Karistianis N, White OB

Saccadic impairment in schizophrenia with prominent negative symptoms, Neuroreport. 2008-09-03

Khoury MJ, Bowen S, Bradley LA, Coates R, Dowling NF, Gwinn M, Kolor K, Moore CA, St Pierre J, Valdez R, Yoon PW

A Decade of Public Health Genomics in the United States: Centers for Disease Control and Prevention 1997-2007, Public health genomics. 2008-09-03

White JR, Escobar-Paramo P, Mongodin EF, Nelson KE, DiRuggiero J

Extensive genome rearrangements and multiple horizontal gene transfers in a population of pyrococcus isolates from Vulcano Island, Italy, Applied and environmental microbiology. 2008-08-22

Rasko DA, Moreira CG, Li de R, Reading NC, Ritchie JM, Waldor MK, Williams N, Taussig R, Wei S, Roth M, Hughes DT, Huntley JF, Fina MW, Falck JR, Sperandio V

Targeting QseC signaling and virulence for antibiotic development, Science (New York, N.Y.). 2008-08-22

Popoutchi P, dos Reis Lemos CR, Silva JC, Nogueira AA, Feres O, Ribeiro da Rocha JJ

Postmenopausal intestinal obstructive endometriosis: case report and review of the literature, São Paulo medical journal = Revista paulista de medicina. 2008-08-19

Yesupriya A, Yu W, Clyne M, Gwinn M, Khoury MJ

The continued need to synthesize the results of genetic associations across multiple studies, Genetics in medicine : official journal of the American College of Medical Genetics. 2008-08-18

Fricke WF, Wright MS, Lindell AH, Harkins DM, Baker-Austin C, Ravel J, Stepanauskas R

Insights into the environmental resistance gene pool from the genome sequence of the multidrug-resistant environmental isolate Escherichia coli SMS-3-5, Journal of bacteriology. 2008-08-15

Rasko DA, Rosovitz MJ, Myers GS, Mongodin EF, Fricke WF, Gajer P, Crabtree J, Sebaihia M, Thomson NR, Chaudhuri R, Henderson IR, Sperandio V, Ravel J

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates, Journal of bacteriology. 2008-08-01

Yousef Mohamad K, Roche SM, Myers G, Bavoil PM, Laroucau K, Magnino S, Laurent S, Rasschaert D, Rodolakis A

Preliminary phylogenetic identification of virulent Chlamydophila pecorum strains, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases. 2008-07-29

Hirschman L, Clark C, Cohen KB, Mardis S, Luciano J, Kottmann R, Cole J, Markowitz V, Kyrpides N, Morrison N, Schriml LM, Field D,

Habitat-Lite: a GSC case study based on free text terms for environmental metadata, Omics : a journal of integrative biology. 2008-07-28

Yousef Mohamad K, Rekiki A, Myers G, Bavoil PM, Rodolakis A

Identification and characterisation of coding tandem repeat variants in incA gene of Chlamydophila pecorum, Veterinary research. 2008-07-25

Passos MR, Ferreira DC, Arze WN, Silva JC, Passos FD, Curvelo JA

Penile myiasis as a differential diagnosis for genital ulcer: a case report, The Brazilian journal of infectious diseases : an official publication of the Brazilian Society of Infectious Diseases. 2008-07-21

Kilian M, Poulsen K, Blomqvist T, Håvarstein LS, Bek-Thomsen M, Tettelin H, Sørensen UB

Evolution of Streptococcus pneumoniae and its close commensal relatives, PloS one. 2008-07-16

McLane LM, Pulliam KF, Devine SE, Corbett AH

The Ty1 integrase protein can exploit the classical nuclear protein import machinery for entry into the nucleus, Nucleic acids research. 2008-06-27

Coates RJ, Khoury MJ, Gwinn M

Five genetic variants associated with prostate cancer, The New England journal of medicine. 2008-06-20

Garrity GM, Field D, Kyrpides N, Hirschman L, Sansone SA, Angiuoli S, Cole JR, Glöckner FO, Kolker E, Kowalchuk G, Moran MA, Ussery D, White O

Toward a standards-compliant genomic and metagenomic publication record, Omics : a journal of integrative biology. 2008-06-20

Field D, Garrity GM, Sansone SA, Sterk P, Gray T, Kyrpides N, Hirschman L, Glöckner FO, Kottmann R, Angiuoli S, White O, Dawyndt P, Thomson N, Gil IS, Morrison N, Tatusova T, Mizrachi I, Vaughan R, Cochrane G, Kagan L, Murphy S, Schriml L,

Meeting report: the fifth Genomic Standards Consortium (GSC) workshop, Omics : a journal of integrative biology. 2008-06-20

Van Brabant B, Gray T, Verslyppe B, Kyrpides N, Dietrich K, Glöckner FO, Cole J, Farris R, Schriml LM, De Vos P, De Baets B, Field D, Dawyndt P,

Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers, Omics : a journal of integrative biology. 2008-06-20

Angiuoli SV, Gussman A, Klimke W, Cochrane G, Field D, Garrity G, Kodira CD, Kyrpides N, Madupu R, Markowitz V, Tatusova T, Thomson N, White O

Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation, Omics : a journal of integrative biology. 2008-06-20

DeBoy RT, Mongodin EF, Fouts DE, Tailford LE, Khouri H, Emerson JB, Mohamoud Y, Watkins K, Henrissat B, Gilbert HJ, Nelson KE

Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus, Journal of bacteriology. 2008-06-13

Brotman RM, Ravel J

Ready or not: the molecular diagnosis of bacterial vaginosis, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America. 2008-06-04

Huntley JF, Conley PG, Rasko DA, Hagman KE, Apicella MA, Norgard MV

Native outer membrane proteins protect mice against pulmonary challenge with virulent type A Francisella tularensis, Infection and immunity. 2008-05-27

Brotman RM, Klebanoff MA, Nansel TR, Andrews WW, Schwebke JR, Zhang J, Yu KF, Zenilman JM, Scharfstein DO

A longitudinal study of vaginal douching and bacterial vaginosis--a marginal structural modeling analysis, American journal of epidemiology. 2008-05-23

Raberg M, Reinecke F, Reichelt R, Malkus U, König S, Pötter M, Fricke WF, Pohlmann A, Voigt B, Hecker M, Friedrich B, Bowien B, Steinbüchel A

Ralstonia eutropha H16 flagellation changes according to nutrient supply and state of poly(3-hydroxybutyrate) accumulation, Applied and environmental microbiology. 2008-05-23

Yesupriya A, Evangelou E, Kavvoura FK, Patsopoulos NA, Clyne M, Walsh MC, Lin BK, Yu W, Gwinn M, Ioannidis JP, Khoury MJ

Reporting of human genome epidemiology (HuGE) association studies: an empirical assessment, BMC medical research methodology. 2008-05-20

Yu W, Wulf A, Yesupriya A, Clyne M, Khoury MJ, Gwinn M

HuGE Watch: tracking trends and patterns of published studies of genetic association and human genome epidemiology in near-real time, European journal of human genetics : EJHG. 2008-05-14

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The minimum information about a genome sequence (MIGS) specification, Nature biotechnology. 2008-05-09

Schutzer SE, Schlater LR, Ronning CM, DeShazer D, Luft BJ, Dunn JJ, Ravel J, Fraser-Liggett CM, Nierman WC

Characterization of clinically-attenuated Burkholderia mallei by whole genome sequencing: candidate strain for exclusion from Select Agent lists, PloS one. 2008-04-30

Marques SM, da Silva JC

An optimized luciferase bioluminescent assay for coenzyme A, Analytical and bioanalytical chemistry. 2008-04-25

Yu W, Clyne M, Dolan SM, Yesupriya A, Wulf A, Liu T, Khoury MJ, Gwinn M

GAPscreener: an automatic tool for screening human genetic association literature in PubMed using the support vector machine technique, BMC bioinformatics. 2008-04-22

Donia MS, Ravel J, Schmidt EW

A global assembly line for cyanobactins, Nature chemical biology. 2008-04-20

Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, Egan A, Galens K, Fraser-Liggett CM, Haas BJ, Inman JM, Kent R, Lemieux S, Malavazi I, Orvis J, Roemer T, Ronning CM, Sundaram JP, Sutton G, Turner G, Venter JC, White OR, Whitty BR, Youngman P, Wolfe KH, Goldman GH, Wortman JR, Jiang B, Denning DW, Nierman WC

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus, PLoS genetics. 2008-04-11

Gwinn M, Guessous I, Khoury M

Intention to analyze in pharmacogenomics studies, Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology. 2008-03-19

Lange A, Mills RE, Devine SE, Corbett AH

A PY-NLS nuclear targeting signal is required for nuclear localization and function of the Saccharomyces cerevisiae mRNA-binding protein Hrp1, The Journal of biological chemistry. 2008-03-14

da Cruz AC, Pochapski MT, Tramonti R, da Silva JC, Antunes AC, Pilatti GL, Santos FA

Evaluation of physical-chemical properties and biocompatibility of a microrough and smooth bioactive glass particles, Journal of materials science. Materials in medicine. 2008-03-06

Janssens AC, Gwinn M, Bradley LA, Oostra BA, van Duijn CM, Khoury MJ

A critical appraisal of the scientific basis of commercial genomic profiles used to assess health risks and personalize health interventions, American journal of human genetics. 2008-03-05

Brotman RM, Ghanem KG, Klebanoff MA, Taha TE, Scharfstein DO, Zenilman JM

The effect of vaginal douching cessation on bacterial vaginosis: a pilot study, American journal of obstetrics and gynecology. 2008-03-04

Bek-Thomsen M, Tettelin H, Hance I, Nelson KE, Kilian M

Population diversity and dynamics of Streptococcus mitis, Streptococcus oralis, and Streptococcus infantis in the upper respiratory tracts of adults, determined by a nonculture strategy, Infection and immunity. 2008-03-03

Lin H, Ouyang S, Egan A, Nobuta K, Haas BJ, Zhu W, Gu X, Silva JC, Meyers BC, Buell CR

Characterization of paralogous protein families in rice, BMC plant biology. 2008-02-19

Fahey MC, Cremer PD, Aw ST, Millist L, Todd MJ, White OB, Halmagyi M, Corben LA, Collins V, Churchyard AJ, Tan K, Kowal L, Delatycki MB

Vestibular, saccadic and fixation abnormalities in genetically confirmed Friedreich ataxia, Brain : a journal of neurology. 2008-01-30

Yu W, Gwinn M, Clyne M, Yesupriya A, Khoury MJ

A navigator for human genome epidemiology, Nature genetics. 2008-01-29

Seedorf H, Fricke WF, Veith B, Brüggemann H, Liesegang H, Strittmatter A, Miethke M, Buckel W, Hinderberger J, Li F, Hagemeier C, Thauer RK, Gottschalk G

The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features, Proceedings of the National Academy of Sciences of the United States of America. 2008-01-24

Gwinn MR, Weston A

Application of oligonucleotide microarray technology to toxic occupational exposures, Journal of toxicology and environmental health. Part A. 2008-01-24

Limburg H, Barria von-Bischhoffshausen F, Gomez P, Silva JC, Foster A

Review of recent surveys on blindness and visual impairment in Latin America, The British journal of ophthalmology. 2008-01-22

Jiang SM, Ishmael N, Dunning Hotopp J, Puliti M, Tissi L, Kumar N, Cieslewicz MJ, Tettelin H, Wessels MR

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Wommack KE, Bhavsar J, Ravel J

Metagenomics: read length matters, Applied and environmental microbiology. 2008-01-11

Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments, Genome biology. 2008-01-11

University of Maryland School of Medicine