Publications - Publications Archive

Theunissen TW, van Oosten AL, Castelo-Branco G, Hall J, Smith A, Silva JC

Nanog overcomes reprogramming barriers and induces pluripotency in minimal conditions, Current biology : CB. 2010-12-30

Glass E, Meyer F, Gilbert JA, Field D, Hunter S, Kottmann R, Kyrpides N, Sansone S, Schriml L, Sterk P, White O, Wooley J

Meeting Report from the Genomic Standards Consortium (GSC) Workshop 10, Standards in genomic sciences. 2010-12-25

Johnson TJ, Thorsness JL, Anderson CP, Lynne AM, Foley SL, Han J, Fricke WF, McDermott PF, White DG, Khatri M, Stell AL, Flores C, Singer RS

Horizontal gene transfer of a ColV plasmid has resulted in a dominant avian clonal type of Salmonella enterica serovar Kentucky, PloS one. 2010-12-22

Marques SM, Petushkov VN, Rodionova NS, da Silva JC

LC-MS and microscale NMR analysis of luciferin-related compounds from the bioluminescent earthworm Fridericia heliota, Journal of photochemistry and photobiology. B, Biology. 2010-12-21

Santos MJ, Fernandes D, Capela S, da Silva JC, Fonseca JE

Interleukin-6 promoter polymorphism -174 G/C is associated with nephritis in Portuguese Caucasian systemic lupus erythematosus patients, Clinical rheumatology. 2010-12-14

Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, Thines M, Ah-Fong A, Anderson R, Badejoko W, Bittner-Eddy P, Boore JL, Chibucos MC, Coates M, Dehal P, Delehaunty K, Dong S, Downton P, Dumas B, Fabro G, Fronick C, Fuerstenberg SI, Fulton L, Gaulin E, Govers F, Hughes L, Humphray S, Jiang RH, Judelson H, Kamoun S, Kyung K, Meijer H, Minx P, Morris P, Nelson J, Phuntumart V, Qutob D, Rehmany A, Rougon-Cardoso A, Ryden P, Torto-Alalibo T, Studholme D, Wang Y, Win J, Wood J, Clifton SW, Rogers J, Van den Ackerveken G, Jones JD, McDowell JM, Beynon J, Tyler BM

Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome, Science (New York, N.Y.). 2010-12-14

Fielding J, Lang W, White OB

Carbon monoxide poisoning: impact on ocular motility, Cognitive and behavioral neurology : official journal of the Society for Behavioral and Cognitive Neurology. 2010-12-14

Steyert SR, Rasko DA, Kaper JB

Functional and phylogenetic analysis of ureD in Shiga toxin-producing Escherichia coli, Journal of bacteriology. 2010-12-10

Zhou X, Brotman RM, Gajer P, Abdo Z, Schüette U, Ma S, Ravel J, Forney LJ

Recent advances in understanding the microbiology of the female reproductive tract and the causes of premature birth, Infectious diseases in obstetrics and gynecology. 2010-12-09

Field D, Sansone S, Delong EF, Sterk P, Friedberg I, Gaudet P, Lewis S, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O, Bramlett B, Gregurick S, Lapp H, Orchard S, Rocca-Serra P, Ruttenberg A, Shah N, Taylor C, Thessen A

Meeting Report: BioSharing at ISMB 2010, Standards in genomic sciences. 2010-12-04

Field D, Sansone S, Delong EF, Sterk P, Friedberg I, Kottmann R, Hirschman L, Garrity G, Cochrane G, Wooley J, Meyer F, Hunter S, White O

Meeting Report: Metagenomics, Metadata and MetaAnalysis (M3) at ISMB 2010, Standards in genomic sciences. 2010-12-04

Neuwald AF

Bayesian classification of residues associated with protein functional divergence: Arf and Arf-like GTPases, Biology direct. 2010-12-03

Silva JC, Egan A, Friedman R, Munro JB, Carlton JM, Hughes AL

Genome sequences reveal divergence times of malaria parasite lineages, Parasitology. 2010-12-01

Torto-Alalibo T, Collmer CW, Gwinn-Giglio M, Lindeberg M, Meng S, Chibucos MC, Tseng TT, Lomax J, Biehl B, Ireland A, Bird D, Dean RA, Glasner JD, Perna N, Setubal JC, Collmer A, Tyler BM

Unifying themes in microbial associations with animal and plant hosts described using the gene ontology, Microbiology and molecular biology reviews : MMBR. 2010-12-01

White O, Kyrpides N

Meeting Report: Towards a Critical Assessment of Functional Annotation Experiment (CAFAE) for bacterial genome annotation, Standards in genomic sciences. 2010-11-29

Martin J, Bruno VM, Fang Z, Meng X, Blow M, Zhang T, Sherlock G, Snyder M, Wang Z

Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads, BMC genomics. 2010-11-24

Gaudet P, Bairoch A, Field D, Sansone SA, Taylor C, Attwood TK, Bateman A, Blake JA, Bult CJ, Cherry JM, Chisholm RL, Cochrane G, Cook CE, Eppig JT, Galperin MY, Gentleman R, Goble CA, Gojobori T, Hancock JM, Howe DG, Imanishi T, Kelso J, Landsman D, Lewis SE, Mizrachi IK, Orchard S, Ouellette BF, Ranganathan S, Richardson L, Rocca-Serra P, Schofield PN, Smedley D, Southan C, Tan TW, Tatusova T, Whetzel PL, White O, Yamasaki C,

Towards BioDBcore: a community-defined information specification for biological databases, Nucleic acids research. 2010-11-18

Brito RO, Affonso PR, Silva JC

Chromosomal diversity and phylogenetic inferences concerning thrips (Insecta, Thysanoptera) in a semi-arid region of Brazil, Genetics and molecular research : GMR. 2010-11-16

Sahl JW, Steinsland H, Redman JC, Angiuoli SV, Nataro JP, Sommerfelt H, Rasko DA

A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation, Infection and immunity. 2010-11-15

Algarra M, Campos BB, Miranda MS, da Silva JC

CdSe quantum dots capped PAMAM dendrimer nanocomposites for sensing nitroaromatic compounds, Talanta. 2010-11-13

Hagan EC, Lloyd AL, Rasko DA, Faerber GJ, Mobley HL

Escherichia coli global gene expression in urine from women with urinary tract infection, PLoS pathogens. 2010-11-11

Brotman RM, Klebanoff MA, Nansel TR, Yu KF, Andrews WW, Zhang J, Schwebke JR

Bacterial vaginosis assessed by gram stain and diminished colonization resistance to incident gonococcal, chlamydial, and trichomonal genital infection, The Journal of infectious diseases. 2010-11-10

Santos CR, Meza AN, Hoffmam ZB, Silva JC, Alvarez TM, Ruller R, Giesel GM, Verli H, Squina FM, Prade RA, Murakami MT

Thermal-induced conformational changes in the product release area drive the enzymatic activity of xylanases 10B: Crystal structure, conformational stability and functional characterization of the xylanase 10B from Thermotoga petrophila RKU-1, Biochemical and biophysical research communications. 2010-11-09

Vaz BS, Cerqueira GM, Silva JC, Manzke VH, Moreira CG, Moreira HL

Sequence analysis of the growth hormone gene of the South American catfish Rhamdia quelen, Genetics and molecular research : GMR. 2010-11-09

Raso TF, Carrasco AO, Silva JC, Marvulo MF, Pinto AA

Seroprevalence of antibodies to Chlamydophila psittaci in zoo workers in Brazil, Zoonoses and public health. 2010-11-05

Mellers BA, Haselhuhn MP, Tetlock PE, Silva JC, Isen AM

Predicting behavior in economic games by looking through the eyes of the players, Journal of experimental psychology. General. 2010-11-02

Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, Wagner DM, Feldkamp M, Kusecek B, Vogler AJ, Li Y, Cui Y, Thomson NR, Jombart T, Leblois R, Lichtner P, Rahalison L, Petersen JM, Balloux F, Keim P, Wirth T, Ravel J, Yang R, Carniel E, Achtman M

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity, Nature genetics. 2010-10-31

Donati C, Hiller NL, Tettelin H, Muzzi A, Croucher NJ, Angiuoli SV, Oggioni M, Dunning Hotopp JC, Hu FZ, Riley DR, Covacci A, Mitchell TJ, Bentley SD, Kilian M, Ehrlich GD, Rappuoli R, Moxon ER, Masignani V

Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species, Genome biology. 2010-10-29

Gilbert JA, Meyer F, Field D, Schriml LM, Garrity GM

Metagenomics: A foundling finds its feet, Standards in genomic sciences. 2010-10-27

Vaz Meirelles G, Ferreira Lanza DC, da Silva JC, Santana Bernachi J, Paes Leme AF, Kobarg J

Characterization of hNek6 interactome reveals an important role for its short N-terminal domain and colocalization with proteins at the centrosome, Journal of proteome research. 2010-10-22

Pena HF, Marvulo MF, Horta MC, Silva MA, Silva JC, Siqueira DB, Lima PA, Vitaliano SN, Gennari SM

Isolation and genetic characterisation of Toxoplasma gondii from a red-handed howler monkey (Alouatta belzebul), a jaguarundi (Puma yagouaroundi), and a black-eared opossum (Didelphis aurita) from Brazil, Veterinary parasitology. 2010-10-15

Siqueira DB, Aéssio FM, Mota RA, Marvulo MF, Mauffrey JF, Monteiro SR, Farias RC, Cunha RC, Oliveira RL, Souza TC, Medeiros ES, Silva JC

Staphylococcus aureus mastitis in a white-eared opossum (Didelphis albiventris) in the Atlantic Forest of northeast Brazil, Journal of zoo and wildlife medicine : official publication of the American Association of Zoo Veterinarians. 2010-10-15

Price LB, Liu CM, Frankel YM, Melendez JH, Aziz M, Buchhagen J, Contente-Cuomo T, Engelthaler DM, Keim PS, Ravel J, Lazarus GS, Zenilman JM

Macroscale spatial variation in chronic wound microbiota: a cross-sectional study, Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society. 2010-10-13

Schutzer SE, Fraser-Liggett CM, Casjens SR, Qiu WG, Dunn JJ, Mongodin EF, Luft BJ

Whole-genome sequences of thirteen isolates of Borrelia burgdorferi, Journal of bacteriology. 2010-10-08

Arensburger P, Megy K, Waterhouse RM, Abrudan J, Amedeo P, Antelo B, Bartholomay L, Bidwell S, Caler E, Camara F, Campbell CL, Campbell KS, Casola C, Castro MT, Chandramouliswaran I, Chapman SB, Christley S, Costas J, Eisenstadt E, Feschotte C, Fraser-Liggett C, Guigo R, Haas B, Hammond M, Hansson BS, Hemingway J, Hill SR, Howarth C, Ignell R, Kennedy RC, Kodira CD, Lobo NF, Mao C, Mayhew G, Michel K, Mori A, Liu N, Naveira H, Nene V, Nguyen N, Pearson MD, Pritham EJ, Puiu D, Qi Y, Ranson H, Ribeiro JM, Roberston HM, Severson DW, Shumway M, Stanke M, Strausberg RL, Sun C, Sutton G, Tu ZJ, Tubio JM, Unger MF, Vanlandingham DL, Vilella AJ, White O, White JR, Wondji CS, Wortman J, Zdobnov EM, Birren B, Christensen BM, Collins FH, Cornel A, Dimopoulos G, Hannick LI, Higgs S, Lanzaro GC, Lawson D, Lee NH, Muskavitch MA, Raikhel AS, Atkinson PW

Sequencing of Culex quinquefasciatus establishes a platform for mosquito comparative genomics, Science (New York, N.Y.). 2010-10-08

Hocking DR, Fielding J, Corben LA, Cremer PD, Millist L, White OB, Delatycki MB

Ocular motor fixation deficits in Friedreich ataxia, Cerebellum (London, England). 2010-10-05

Gwinn MR, Craig J, Axelrad DA, Cook R, Dockins C, Fann N, Fegley R, Guinnup DE, Helfand G, Hubbell B, Mazur SL, Palma T, Smith RL, Vandenberg J, Sonawane B

Meeting report: Estimating the benefits of reducing hazardous air pollutants--summary of 2009 workshop and future considerations, Environmental health perspectives. 2010-10-04

Mullaney JM, Mills RE, Pittard WS, Devine SE

Small insertions and deletions (INDELs) in human genomes, Human molecular genetics. 2010-09-21

Tasse L, Bercovici J, Pizzut-Serin S, Robe P, Tap J, Klopp C, Cantarel BL, Coutinho PM, Henrissat B, Leclerc M, Doré J, Monsan P, Remaud-Simeon M, Potocki-Veronese G

Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes, Genome research. 2010-09-14

Aragão JA, Reis FP, Silva JC, Miranda F

Arrangement of collagen fibers in the wall of the main gastrocnemius venous trunk in humans, Annals of anatomy = Anatomischer Anzeiger : official organ of the Anatomische Gesellschaft. 2010-09-09

Alborghetti MR, Furlan AS, Silva JC, Paes Leme AF, Torriani IC, Kobarg J

Human FEZ1 protein forms a disulfide bond mediated dimer: implications for cargo transport, Journal of proteome research. 2010-09-03

Gwinn M, W David Dotson , Khoury MJ

PLoS currents: evidence on genomic tests - At the crossroads of translation, PLoS currents. 2010-09-02

Bruno VM, Wang Z, Marjani SL, Euskirchen GM, Martin J, Sherlock G, Snyder M

Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq, Genome research. 2010-09-01

Yang J, van Oosten AL, Theunissen TW, Guo G, Silva JC, Smith A

Stat3 activation is limiting for reprogramming to ground state pluripotency, Cell stem cell. 2010-08-31

Dubey JP, Rajendran C, Costa DG, Ferreira LR, Kwok OC, Qu D, Su C, Marvulo MF, Alves LC, Mota RA, Silva JC

New Toxoplasma gondii genotypes isolated from free-range chickens from the Fernando de Noronha, Brazil: unexpected findings, The Journal of parasitology. 2010-08-26

Lopes R, Almeida J, Silva JC, Almeida PB, Madureira AJ, Ramos I, Pinho P, Maciel MJ

Spontaneous closure of a left ventricle pseudoaneurysm following apical venting, European journal of echocardiography : the journal of the Working Group on Echocardiography of the European Society of Cardiology. 2010-08-25

Chan AP, Crabtree J, Zhao Q, Lorenzi H, Orvis J, Puiu D, Melake-Berhan A, Jones KM, Redman J, Chen G, Cahoon EB, Gedil M, Stanke M, Haas BJ, Wortman JR, Fraser-Liggett CM, Ravel J, Rabinowicz PD

Draft genome sequence of the oilseed species Ricinus communis, Nature biotechnology. 2010-08-22

Furtado MM, Jácomo AT, Kashivakura CK, Tôrres NM, Marvulo MF, Ragozo AM, de Souza SL, Neto JS, Vasconcellos SA, Morais ZM, Cortez A, Richtzenhain LJ, Silva JC, Silveira L

Serologic survey for selected infectious diseases in free-ranging Brazilian tapirs (Tapirus terrestris) in the cerrado of central Brazil, Journal of zoo and wildlife medicine : official publication of the American Association of Zoo Veterinarians. 2010-08-20

Khoury MJ, Gwinn M, Ioannidis JP

The emergence of translational epidemiology: from scientific discovery to population health impact, American journal of epidemiology. 2010-08-05

Lixa AT, Campos JM, Resende AL, Silva JC, Almeida MM, Aguiar-Menezes EL

[Diversity of Coccinellidae (Coleoptera) using aromatic plants (Apiaceae) as survival and reproduction sites in agroecological system], Neotropical entomology. 2010-08-02

Veiga-Castelli LC, Silva JC, Meola J, Ferriani RA, Yoshimoto M, Santos SA, Squire JA, Martelli L

Genomic alterations detected by comparative genomic hybridization in ovarian endometriomas, Brazilian journal of medical and biological research = Revista brasileira de pesquisas médicas e biológicas / Sociedade Brasileira de Biofísica ... [et al.]. 2010-07-30

Brotman RM, Ravel J, Cone RA, Zenilman JM

Rapid fluctuation of the vaginal microbiota measured by Gram stain analysis, Sexually transmitted infections. 2010-07-27

Mitchell CM, Hovis KM, Bavoil PM, Myers GS, Carrasco JA, Timms P

Comparison of koala LPCoLN and human strains of Chlamydia pneumoniae highlights extended genetic diversity in the species, BMC genomics. 2010-07-21

Lebreiro A, Pinho T, Silva JC, Madureira A, Macedo F, Ramos I, Maciel MJ

[Percutaneous closure of a giant coronary artery fistula draining into superior vena cava], Revista portuguesa de cardiologia : orgão oficial da Sociedade Portuguesa de Cardiologia = Portuguese journal of cardiology : an official journal of the Portuguese Society of Cardiology. 2010-07-19

Bottacini F, Medini D, Pavesi A, Turroni F, Foroni E, Riley D, Giubellini V, Tettelin H, van Sinderen D, Ventura M

Comparative genomics of the genus Bifidobacterium, Microbiology (Reading, England). 2010-07-15

Iskow RC, McCabe MT, Mills RE, Torene S, Pittard WS, Neuwald AF, Van Meir EG, Vertino PM, Devine SE

Natural mutagenesis of human genomes by endogenous retrotransposons, Cell. 2010-07-06

Becker LV, Rosa CS, Souza Vdo C, Bagatini MD, Casali EA, Leal CA, da Silva JC, Moretto MB, Pinheiro Fde V, Morsch VM, Schetinger MR, Leal DB

Activities of enzymes that hydrolyze adenine nucleotides in platelets from patients with rheumatoid arthritis, Clinical biochemistry. 2010-07-01

Schatz MC, Phillippy AM, Gajer P, DeSantis TZ, Andersen GL, Ravel J

Integrated microbial survey analysis of prokaryotic communities for the PhyloChip microarray, Applied and environmental microbiology. 2010-06-25

Hirschman L, Sterk P, Field D, Wooley J, Cochrane G, Gilbert J, Kolker E, Kyrpides N, Meyer F, Mizrachi I, Nakamura Y, Sansone SA, Schriml L, Tatusova T, White O, Yilmaz P

Meeting Report: "Metagenomics, Metadata and Meta-analysis" (M3) Workshop at the Pacific Symposium on Biocomputing 2010, Standards in genomic sciences. 2010-06-15

Silva JC, Pacheco C, Bizato J, de Souza BV, Ribeiro TE, Bertini AM

Metformin compared with glyburide for the management of gestational diabetes, International journal of gynaecology and obstetrics: the official organ of the International Federation of Gynaecology and Obstetrics. 2010-06-14

Carretero J, Shimamura T, Rikova K, Jackson AL, Wilkerson MD, Borgman CL, Buttarazzi MS, Sanofsky BA, McNamara KL, Brandstetter KA, Walton ZE, Gu TL, Silva JC, Crosby K, Shapiro GI, Maira SM, Ji H, Castrillon DH, Kim CF, García-Echeverría C, Bardeesy N, Sharpless NE, Hayes ND, Kim WY, Engelman JA, Wong KK

Integrative genomic and proteomic analyses identify targets for Lkb1-deficient metastatic lung tumors, Cancer cell. 2010-06-14

McNulty SN, Foster JM, Mitreva M, Dunning Hotopp JC, Martin J, Fischer K, Wu B, Davis PJ, Kumar S, Brattig NW, Slatko BE, Weil GJ, Fischer PU

Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer, PloS one. 2010-06-09

Thom KA, Hsiao WW, Harris AD, Stine OC, Rasko DA, Johnson JK

Patients with Acinetobacter baumannii bloodstream infections are colonized in the gastrointestinal tract with identical strains, American journal of infection control. 2010-06-08

Gonçalves KA, Borges JC, Silva JC, Papa PF, Bressan GC, Torriani IL, Kobarg J

Solution structure of the human signaling protein RACK1, BMC structural biology. 2010-06-08

Ravel J, Gajer P, Abdo Z, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Gorle R, Russell J, Tacket CO, Brotman RM, Davis CC, Ault K, Peralta L, Forney LJ

Vaginal microbiome of reproductive-age women, Proceedings of the National Academy of Sciences of the United States of America. 2010-06-03

Li L, Hsiao WW, Nandakumar R, Barbuto SM, Mongodin EF, Paster BJ, Fraser-Liggett CM, Fouad AF

Analyzing endodontic infections by deep coverage pyrosequencing, Journal of dental research. 2010-06-02

da Silva JC, Dias RP, de Almeida WB, Rocha WR

DFT study of the full catalytic cycle for the propene hydroformylation catalyzed by a heterobimetallic HPt(SnCl3)(PH3)2 model catalyst, Journal of computational chemistry. 2010-05-31

Fonseca JE, Canhão H, Reis P, Santos MJ, Branco J, Quintal A, Malcata A, Araújo D, Ventura F, Figueiredo G, da Silva JC, Patto JV, de Queiroz MV, Santos RA, Neto AJ, de Matos A, Rodrigues A, Mourão AF, Ribeiro AS, Cravo AR, Barcelos A, Cardoso A, Vilar A, Braña A, Faustino A, Silva C, Godinho F, Cunha I, Costa JA, Gomes JA, Pinto JA, da Silva JA, Miranda LC, Inês L, Santos LM, Cruz M, Salvador MJ, Ferreira MJ, Rial M, Bernardes M, Bogas M, Araújo P, Machado P, Pinto P, de Melo RG, Cortes S, Alcino S, Capela S,

Portuguese guidelines for the use of biological agents in rheumatoid arthritis - March 2010 update, Acta reumatológica portuguesa. 2010-05-27

Janulczyk R, Masignani V, Maione D, Tettelin H, Grandi G, Telford JL

Simple sequence repeats and genome plasticity in Streptococcus agalactiae, Journal of bacteriology. 2010-05-21

, Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HH, Wortman JR, Rusch DB, Mitreva M, Sodergren E, Chinwalla AT, Feldgarden M, Gevers D, Haas BJ, Madupu R, Ward DV, Birren BW, Gibbs RA, Methe B, Petrosino JF, Strausberg RL, Sutton GG, White OR, Wilson RK, Durkin S, Giglio MG, Gujja S, Howarth C, Kodira CD, Kyrpides N, Mehta T, Muzny DM, Pearson M, Pepin K, Pati A, Qin X, Yandava C, Zeng Q, Zhang L, Berlin AM, Chen L, Hepburn TA, Johnson J, McCorrison J, Miller J, Minx P, Nusbaum C, Russ C, Sykes SM, Tomlinson CM, Young S, Warren WC, Badger J, Crabtree J, Markowitz VM, Orvis J, Cree A, Ferriera S, Fulton LL, Fulton RS, Gillis M, Hemphill LD, Joshi V, Kovar C, Torralba M, Wetterstrand KA, Abouellleil A, Wollam AM, Buhay CJ, Ding Y, Dugan S, FitzGerald MG, Holder M, Hostetler J, Clifton SW, Allen-Vercoe E, Earl AM, Farmer CN, Liolios K, Surette MG, Xu Q, Pohl C, Wilczek-Boney K, Zhu D

A catalog of reference genomes from the human microbiome, Science (New York, N.Y.). 2010-05-21

Mitchell CM, Hutton S, Myers GS, Brunham R, Timms P

Chlamydia pneumoniae is genetically diverse in animals and appears to have crossed the host barrier to humans on (at least) two occasions, PLoS pathogens. 2010-05-20

Hughes DT, Terekhova DA, Liou L, Hovde CJ, Sahl JW, Patankar AV, Gonzalez JE, Edrington TS, Rasko DA, Sperandio V

Chemical sensing in mammalian host-bacterial commensal associations, Proceedings of the National Academy of Sciences of the United States of America. 2010-05-10

Moriel DG, Bertoldi I, Spagnuolo A, Marchi S, Rosini R, Nesta B, Pastorello I, Corea VA, Torricelli G, Cartocci E, Savino S, Scarselli M, Dobrindt U, Hacker J, Tettelin H, Tallon LJ, Sullivan S, Wieler LH, Ewers C, Pickard D, Dougan G, Fontana MR, Rappuoli R, Pizza M, Serino L

Identification of protective and broadly conserved vaccine antigens from the genome of extraintestinal pathogenic Escherichia coli, Proceedings of the National Academy of Sciences of the United States of America. 2010-05-03

Kendall MM, Rasko DA, Sperandio V

The LysR-type regulator QseA regulates both characterized and putative virulence genes in enterohaemorrhagic Escherichia coli O157:H7, Molecular microbiology. 2010-04-27

Orvis J, Crabtree J, Galens K, Gussman A, Inman JM, Lee E, Nampally S, Riley D, Sundaram JP, Felix V, Whitty B, Mahurkar A, Wortman J, White O, Angiuoli SV

Ergatis: a web interface and scalable software system for bioinformatics workflows, Bioinformatics (Oxford, England). 2010-04-22

McBride CM, Bowen D, Brody LC, Condit CM, Croyle RT, Gwinn M, Khoury MJ, Koehly LM, Korf BR, Marteau TM, McLeroy K, Patrick K, Valente TW

Future health applications of genomics: priorities for communication, behavioral, and social sciences research, American journal of preventive medicine. 2010-04-22

Wagner DM, Runberg J, Vogler AJ, Lee J, Driebe E, Price LB, Engelthaler DM, Fricke WF, Ravel J, Keim P

No resistance plasmid in Yersinia pestis, North America, Emerging infectious diseases. 2010-04-22

van Schaik W, Top J, Riley DR, Boekhorst J, Vrijenhoek JE, Schapendonk CM, Hendrickx AP, Nijman IJ, Bonten MJ, Tettelin H, Willems RJ

Pyrosequencing-based comparative genome analysis of the nosocomial pathogen Enterococcus faecium and identification of a large transferable pathogenicity island, BMC genomics. 2010-04-14

Pearson MM, Rasko DA, Smith SN, Mobley HL

Transcriptome of swarming Proteus mirabilis, Infection and immunity. 2010-04-05

Camarena L, Bruno V, Euskirchen G, Poggio S, Snyder M

Molecular mechanisms of ethanol-induced pathogenesis revealed by RNA-sequencing, PLoS pathogens. 2010-04-01

Bik EM, Long CD, Armitage GC, Loomer P, Emerson J, Mongodin EF, Nelson KE, Gill SR, Fraser-Liggett CM, Relman DA

Bacterial diversity in the oral cavity of 10 healthy individuals, The ISME journal. 2010-03-25

Schütte UM, Abdo Z, Foster J, Ravel J, Bunge J, Solheim B, Forney LJ

Bacterial diversity in a glacier foreland of the high Arctic, Molecular ecology. 2010-03-24

Yu W, Liu T, Valdez R, Gwinn M, Khoury MJ

Application of support vector machine modeling for prediction of common diseases: the case of diabetes and pre-diabetes, BMC medical informatics and decision making. 2010-03-22

Lansingh VC, Resnikoff S, Tingley-Kelley K, Nano ME, Martens M, Silva JC, Duerksen R, Carter MJ

Cataract surgery rates in latin america: a four-year longitudinal study of 19 countries, Ophthalmic epidemiology. 2010-03-22

Côbo EC, Silva JC, Cota UA, Machado JR, Castellano LR

Evaluation of a modified microscopic direct diagnosis of dermatophytosis, Journal of microbiological methods. 2010-03-06

Forney LJ, Gajer P, Williams CJ, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Brotman RM, Davis CC, Ault K, Ravel J

Comparison of self-collected and physician-collected vaginal swabs for microbiome analysis, Journal of clinical microbiology. 2010-03-03

Gwinn MR, Tran L

Risk management of nanomaterials, Wiley interdisciplinary reviews. Nanomedicine and nanobiotechnology. 2010-03-01

Klebanoff MA, Andrews WW, Zhang J, Brotman RM, Nansel TR, Yu KF, Schwebke JR

Race of male sex partners and occurrence of bacterial vaginosis, Sexually transmitted diseases. 2010-02-24

Brotman RM, Melendez JH, Smith TD, Galai N, Zenilman JM

Effect of menses on clearance of Y-chromosome in vaginal fluid: implications for a biomarker of recent sexual activity, Sexually transmitted diseases. 2010-02-01

Bonnette PC, Robinson BS, Silva JC, Stokes MP, Brosius AD, Baumann A, Buckbinder L

Phosphoproteomic characterization of PYK2 signaling pathways involved in osteogenesis, Journal of proteomics. 2010-01-28

Klebanoff MA, Nansel TR, Brotman RM, Zhang J, Yu KF, Schwebke JR, Andrews WW

Personal hygienic behaviors and bacterial vaginosis, Sexually transmitted diseases. 2010-01-25

Chaudhuri RR, Sebaihia M, Hobman JL, Webber MA, Leyton DL, Goldberg MD, Cunningham AF, Scott-Tucker A, Ferguson PR, Thomas CM, Frankel G, Tang CM, Dudley EG, Roberts IS, Rasko DA, Pallen MJ, Parkhill J, Nataro JP, Thomson NR, Henderson IR

Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042, PloS one. 2010-01-20

Rasko DA, Sperandio V

Anti-virulence strategies to combat bacteria-mediated disease, Nature reviews. Drug discovery. 2010-01-18

Foster JT, Allan GJ, Chan AP, Rabinowicz PD, Ravel J, Jackson PJ, Keim P

Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis), BMC plant biology. 2010-01-18

Eppinger M, Worsham PL, Nikolich MP, Riley DR, Sebastian Y, Mou S, Achtman M, Lindler LE, Ravel J

Genome sequence of the deep-rooted Yersinia pestis strain Angola reveals new insights into the evolution and pangenome of the plague bacterium, Journal of bacteriology. 2010-01-08

Reading NC, Rasko D, Torres AG, Sperandio V

A transcriptome study of the QseEF two-component system and the QseG membrane protein in enterohaemorrhagic Escherichia coli O157 : H7, Microbiology (Reading, England). 2010-01-07

Price LB, Liu CM, Johnson KE, Aziz M, Lau MK, Bowers J, Ravel J, Keim PS, Serwadda D, Wawer MJ, Gray RH

The effects of circumcision on the penis microbiome, PloS one. 2010-01-06

Calderon VE, Chang Q, McDermott M, Lytle MB, McKee G, Rodriguez K, Rasko DA, Sperandio V, Torres AG

Outbreak caused by cad-negative Shiga toxin-producing Escherichia coli O111, Oklahoma, Foodborne pathogens and disease. 2010-01-06