Publications
2009
Matthew Berriman, Brian J. Haas, Philip T. LoVerde, R. Alan Wilson, Gary P. Dillon, Gustavo C. Cerqueira, Susan T. Mashiyama, Bissan Al-Lazikani, Luiza F. Andrade, Peter D. Ashton, Martin A. Aslett, Daniella C. Bartholomeu, Gaelle Blandin, Conor R. Caffrey, Avril Coghlan, Richard Coulson, Tim A. Day, Art Delcher, Ricardo DeMarco, Appolinaire Djikeng, Tina Eyre, John A. Gamble, Elodie Ghedin, Yong Gu, Christiane Hertz-Fowler, Hirohisha Hirai, Yuriko Hirai, Robin Houston, Alasdair Ivens, David A. Johnston, Daniela Lacerda, Camila D. Macedo, Paul McVeigh, Zemin Ning, Guilherme Oliveira, John P. Overington, Julian Parkhill, Mihaela Pertea, Raymond J. Pierce, Anna V. Protasio, Michael A. Quail, Marie-Adele Rajandream, Jane Rogers, Mohammed Sajid, Steven L. Salzberg, Mario Stanke, Adrian R. Tivey, Owen White, David L. Williams, Jennifer Wortman, Wenjie Wu, Mostafa Zamanian, Adhemar Zerlotini, Claire M. Fraser-Liggett, Barclay G. Barrell & Najib M. El-Sayed
The genome of the blood fluke Schistosoma mansoni, Nature. 16 July 2009; Vol. 460, No. 7253 pp. 352-358
Ann C. Palmenberg, David Spiro,Ryan Kuzmickas, Shiliang Wang, Appolinaire Djikeng, Jennifer A. Rathe, Claire M. Fraser-Liggett, Stephen B. Liggett
Sequencing and Analyses of All Known Human Rhinovirus Genomes Reveal Structure and Evolution
Science. 2009 April; Volume 324, Issue 5923, pp. 55
Origin
Fricke WF, Welch TJ, McDermott PF, Mammel MK, LeClerc JE, White DG, Cebula TA, Ravel J.
2009. Comparative genomics of the IncA/C multidrug resistance plasmid family. Journal of Bacteriology 191(15):4750-7. Epub 2009 May 29.
Bachmann BO, Ravel J.
2009. Methods for in silico prediction of microbial polyketide and nonribosomal peptide biosynthetic pathways from DNA sequence data. Methods in Enzymology 458:181-217.
Simonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J and Keim P.
2009. Bacillus anthracis in China and its relationship to worldwide lineages. BMC Microbiology. 9:71.
Kenefic LJ, Pearson T, Okinaka RT, Schupp JM, Wagner DM, Ravel J, Hoffmaster AR, Trim CP, Chung W-K, Beaudry JA, Foster JT, Mead JI, Keim P.
2009. Pre-columbian origins for north american anthrax. PLoS ONE. 4(3): e4813.
Ravel J, Jiang L, Stanley ST, Wilson MR, Decker RS, Read TD, Worsham P, Keim PS, Salzberg SL, Fraser-Liggett CM, Rasko DA.
2009 The complete genome sequence of Bacillus anthracis Ames "Ancestor". Journal of Bacteriology. 191(1):445-6.
Dongying Wu, Jason Raymond, Martin Wu, Sourav Chatterji, Qinghu Ren, Joel E. Graham, Donald A. Bryant, Frank Robb, Albert Colman, Luke J. Tallon, Jonathan H. Badger, Ramana Madupu, Naomi L. Ward, and Jonathan A. Eisen.
Complete Genome Sequence of the Aerobic CO-Oxidizing Thermophile Thermomicrobium roseum. PLoS ONE. 2009; 4(1): e4207.
Fricke, W.F., McDermott, P.F., Mammel, M.K., Zhao, S., Johnson, T.J., Rasko, D.A., Fedorka-Cray, P.J., Pedroso, A., Whichard, J., LeClerc, J.E., White, D.G., Cebula, T.A., and Ravel, J.
(2009). Antimicrobial resistance-encoding APEC plasmids in Salmonella enterica serovar Kentucky from poultry. Appl Environ Microbiol, 75(18): September 2009.
Bordenstein, S.R., C. Paraskevopoulos, J. C. Dunning Hotopp, P. Sapountzis, N. Lo, C. Bandi, H. Tettelin, J. Werren, and K. Bourtzis.
(2009) "Parasitism and mutualism in Wolbachia: what the phylogenomic trees can and cannot say," Mol Biol Evol 26(1):231-41.
R.S. Stephens, G.S.A. Myers, M. Eppinger, P.M. Bavoil
(2009): Divergence without difference: Phylogenetics and taxonomy resolved. FEMS Immunology & Medical Microbiology. Volume 55 (2), 115-119.
